ww8central - software

Abaqus

Anonymous (anonymous@undisclosed.example.com) — 2022-08-10T11:10:02+00:00

Abaqus Abaqus 2018 /opt/apps/abaqus/2018 module load abaqus/2018 Online Documantation HTML HTML Abaqus 6.14 Abaqus 2017 /opt/apps/abaqus/2017 module load abaqus/2017 Online Documantation HTML HTML Getting started module load abaqus Useful Code-Snippets

Boost

Anonymous (anonymous@undisclosed.example.com) — 2015-02-18T13:03:57+00:00

Boost To initialize the BOOST_INC and and BOOST_LIB environment variables source the boost module (ask your local system administrator where to find it). Log To use the log module from boost add the following to your cmake file. find_package(Threads REQUIRED) set(CMAKE_CXX_FLAGS "${CMAKE_CXX_FLAGS} -lrt") include_directories($ENV{BOOST_INC}) target_link_libraries (${TARGET} ${CMAKE_THREAD_LIBS_INIT}) target_link_libraries(${TARGET} $ENV{BOOST_LIB}/libboost_random-gcc46-mt-d-1_54.a) targe…

CFDEM-LIGGGTHS

Anonymous (anonymous@undisclosed.example.com) — 2018-09-03T10:51:55+00:00

CFDEM-LIGGGTHS CFDEM Installation and requirements Neccessary packages } Perhaps neccessary packages: libfftw-3.3 libarpack2

Code_Aster

Anonymous (anonymous@undisclosed.example.com) — 2021-12-03T16:40:33+00:00

Code_Aster Code_Aster is a finite element software for multiphysical problems published under open source. Code_Aster is developed by EDF. Code_Aster 14.06 /opt/apps/code_aster/14.06 Online Documantation HTML Astk /opt/apps/code_aster/14.6.0/bin/astk

Comsol

Anonymous (anonymous@undisclosed.example.com) — 2021-03-03T13:08:20+00:00

Comsol Comsol Research Available Lizenses: 1 > module load comsol/research > comsol Comsol Teaching Available Lizenses: 1 > module load comsol/teaching > comsol Teaching and Research License are for different purposes. The Research License also contains more simulation modules.

DAMASK

Anonymous (anonymous@undisclosed.example.com) — 2021-03-25T14:19:18+00:00

DAMASK lets try ;) [ DAMASK 3.0.0 (default) [ > module load mpi/openmpi-x86_64 Pre-configured docker image A pre-configured docker image is available at the docker hub. For quick testing of the DAMASK spectral solver, use podman pull kedokudo/damaskdocker:damask

Deal.ii

Anonymous (anonymous@undisclosed.example.com) — 2017-02-22T14:29:12+00:00

Deal.ii Website Deal.II 8.4.1 Features: ARPACK, BOOST, BZIP2, CXX11, CXX14 HDF5, LAPACK, METIS, MPI, MUPARSER, NETCDF, OPENCASCADE, P4EST, PETSC, THREADS, TRILINOS, UMFPACK, ZLIB, LUA (Not available: WITH_64BIT_INDICES, WITH_SLEPC) module load p4est/1.1 module load mpi/openmpi-x86_64 module load parmetis/ module load hdf5/1.8.17-system-mpi module load petsc/3.6.4-lite module load trilinos/12.4.2-deal84-mpi module load dealii/8.4.1-tri-petsc-hdf5-m…

Eclipse

Anonymous (anonymous@undisclosed.example.com) — 2019-09-10T13:43:02+00:00

Eclipse Exclipse 4.10 On your Desktop you find a preinstalled Eclipse environment. * Eclipse for Parallel Application Developers Install optional plugins Subversion (Subversive) Update site: Guide throug the installation process

Elmer

Anonymous (anonymous@undisclosed.example.com) — 2024-04-17T11:34:46+00:00

Elmer Website Elmer 9.0 > module load elmer/9.0 > ElmerGUI Elmer is a finite element software for multiphysical problems published under open source. Elmer is mainly but not exclusively developed by CSC – IT Center for Science. Compile: git clone -b devel https://github.com/ElmerCSC/elmerfem.git myelmer cd myelmer/ mkdir build cd build/ cp /usr/net/src/elmer/build-elmer.sh .

Self compiled Modules

Anonymous (anonymous@undisclosed.example.com) — 2014-08-12T14:37:39+00:00

Self compiled Modules Trilinos Trilinos version 11.4.3 OOFEM version 2.2 version 2.3 PetSc version 3.4.4 Metis / ParMetis METIS is a set of serial programs for partitioning graphs, partitioning finite element meshes, and producing fill reducing orderings for sparse matrices. The algorithms implemented in METIS are based on the multilevel recursive-bisection, multilevel k-way, and multi-constraint partitioning schemes.

ESyS-Particle

Anonymous (anonymous@undisclosed.example.com) — 2015-07-29T15:11:21+00:00

ESyS-Particle Website ESyS-Particle 2.3 $ source /usr/net/opt/esysparticle-2.3/module_esys $ esysparticle ESyS-Particle is Open Source software for particle-based numerical modelling. The software implements the Discrete Element Method (DEM), a widely used technique for modelling processes involving large deformations, granular flow and/or fragmentation.

FEniCS

Anonymous (anonymous@undisclosed.example.com) — 2020-08-03T08:46:06+00:00

FEniCS Local installation Fool proof(??) step by step instruction create a virtual python environment named fenics with --system-site-packages mkvirtualenv --python=`which python` fenics pip install fenics activate it by workon fenics Old step by step instruction (if you need dolfin)

FiPy

Anonymous (anonymous@undisclosed.example.com) — 2024-07-02T12:21:28+00:00

FiPy Tested FiPy 3.4.5 on * Fedora 39 * Python 3.12 A finite volume PDE solver in Python INSTALLED: 3.4.5 (latest) Fixes, available updates and patches can be found on the Maillinglist. Install: Create a Python Virtualenvironment. mkvirtualenv --python=`which python3.12` fipy

Firedrake installation routine

Anonymous (anonymous@undisclosed.example.com) — 2016-08-09T13:07:06+00:00

Firedrake installation routine PETSC module load petsc/3.6.3-for-python Install petsc4py pip install petsc4py==3.6.0 Install h5py using same version as petsc env CFLAGS="-I$MPI_INCLUDE -I$PETSC_DIR/include -L$PETSC_DIR/lib" pip install -U h5py

GEOS

Anonymous (anonymous@undisclosed.example.com) — 2015-01-28T09:30:17+00:00

GEOS GEOS 3.4.2 Non optimized, minimal Build: Compiler gcc-4.9 Port of JTS v1.12.0 required by: Shapely GEOS_DIR=/usr/net/lib/geos-3.4.2-gcc4.9 GEOS_LIB=/usr/net/lib/geos-3.4.2-gcc4.9/lib GEOS_INC=/usr/net/lib/geos-3.4.2-gcc4.9/include LDFLAGS="-L${GEOS_LIB}"

GiD

Anonymous (anonymous@undisclosed.example.com) — 2015-07-28T14:09:19+00:00

GiD Website GiD 12.0.7 (Fedora systems) **/opt/.apps-bin/gid/gid12.0.7×64/gid [TODO] module load gid/12.0.7 GiD is a universal, adaptive and user-friendly pre and postprocessor for numerical simulations in science and engineering. It has been designed to cover all the common needs in the numerical simulations field from pre to post-processing: geometrical modeling, effective definition of analysis data, meshing, data transfer to analysis software, as well as the …

GMSH

Anonymous (anonymous@undisclosed.example.com) — 2014-12-03T14:26:59+00:00

GMSH Website Individual Apps GMSH 2.8.5 Call: /opt/gmsh/bin/gmsh or include Alias in your .bashrc alias gmsh='/opt/gmsh/bin/gmsh' GMSH 2.5.1 Installed 2.5.1 base package of Ubuntu 12.04 Manuals Manual Tutorials Tutorials can be found on the website of the gmsh or on your local harddisk in:

h5py

Anonymous (anonymous@undisclosed.example.com) — 2020-11-18T21:43:07+00:00

h5py Installation guide Running pip install h5py gives the error message h5py/defs.c:8:22: fatal error: pyconfig.h: No such file or directory this was due to the python development package not being installed. Subsequently running pip install h5py

HDF5lib

Anonymous (anonymous@undisclosed.example.com) — 2017-01-25T13:49:10+00:00

HDF5lib hdf5 serial (default) module load hdf5/1.8.17-system hdf5parallel (MPI) module load hdf5/1.7.17-system-mpi HOWTO USE Example Makefile CXX=/usr/bin/g++-4.9 # Flags for the C++ compiler CFLAGS=-Wall -ansi -pedantic -O3 -std=c++11 INC= -I${HDF5_INCLUDE} LIB= -L${HDF5_LIB} -lhdf5 -lhdf5_cpp -L${ZLIB_DIR} -ldl -lz # List of executables EXECUTABLES=voro # Makefile rules all: $(EXECUTABLES) voro: random_points.cc $(CXX) $(CFLAGS) -o voro random_points.cc $(LIB) $(INC) …

LAMMPS

Anonymous (anonymous@undisclosed.example.com) — 2024-09-15T01:32:49+00:00

LAMMPS Additions / Flavours atomistica fireJ There are different versions of LAMMPS available on the systems of the institute. To get a list off all Style options compiled with the particular executable, call: lmp_g++ -h To run LAMMPS with MPI - module load mpi/openmpi-x86_64

Mathematica

Anonymous (anonymous@undisclosed.example.com) — 2019-04-10T12:33:17+00:00

Mathematica Website Mathematica 11.3.0 Usage module load mathematica/11.3.0 Mathematica 11.1.0 (deprecated) Usage module load mathematica/11.1.0 Description Mathematica is a computational software program used in many scientific, engineering, mathematical and computing fields, based on symbolic mathematics and is developed by Wolfram Research.

Matlab

Anonymous (anonymous@undisclosed.example.com) — 2017-07-04T08:43:54+00:00

Matlab Automatic home directory remount If you are planning to run long lasting simulations and close the SSH-session during the simulation, you should be aware that your home directory is unmounted after some time. This may cause problems writing output files. You can avoid this running the script from the /locData/ folder.

microMegas

Anonymous (anonymous@undisclosed.example.com) — 2015-09-17T12:14:52+00:00

microMegas 'mM' is an open source program for DD (Dislocation Dynamics) simulations originally developed at the 'Laboratoire d'Etude des Microstructures', CNRS-ONERA, France. (from the Website) Website SVN Repository User Account required. Compilation

OOF: Finite Element Analysis of Microstructures

Anonymous (anonymous@undisclosed.example.com) — 2017-08-03T14:22:01+00:00

OOF: Finite Element Analysis of Microstructures Installation python setup.py build --blas-libraries="lapack blas m" --enable-openmp python setup.py install [--prefix=SOMEWHER | --home ]

OOFEM

Anonymous (anonymous@undisclosed.example.com) — 2015-10-13T08:59:43+00:00

OOFEM Website OOFEM 2.3 (default) Features: fm;tm;sm;dss;openmp;LAPACK;metis;TinyXML-2;IML++;Python /opt/apps/oofem/2.3-default/bin/oofem module load oofem/2.3-default OOFEM 2.3 (petsc) Features: fm;tm;sm;dss;openmp;LAPACK;metis;PETSc;MPI;IML++;Python

OpenFOAM

Anonymous (anonymous@undisclosed.example.com) — 2017-01-25T13:45:35+00:00

OpenFOAM Website ---------- Fedora 23 only OpenFoam 2.3.1 module load mpi/openmpi-x86_64 module load OpenFOAM/2.3.1 Includes Paraview 4.1.0 with OpenFOAM plugins (paraFoam). OpenFoam 3.0+ module load mpi/openmpi-x86_64 module load OpenFOAM/3.0+

ParaDiS

Anonymous (anonymous@undisclosed.example.com) — 2017-09-13T09:06:02+00:00

ParaDiS Parallel Dislocation Simulator (ParaDis) is a Discrete Dislocation Dynamics simulation code developed by scientists at Lawrence Livermore National Labrotory. The website: Compiling: 1, loading openmpi 2, Simply edit 'makefile.setup' and set the

Paraview

Anonymous (anonymous@undisclosed.example.com) — 2021-10-19T14:15:53+00:00

Paraview [ Paraview 5.9.0 (default) 4.0.1 / 4.3.1 / 5.4.0 / 5.4.1 / 5.7.0 / 5.9.0 (_headless_egl/_headless_mesa) > module load paraview/VERSION User Manual Running PV in client server mode Open a ssh-tunnel by: ssh -nNT -L 59000:localhost:11111 USER@MACHINE.ww.uni-erlangen.de

PETSc 3.16.6

Anonymous (anonymous@undisclosed.example.com) — 2025-10-24T07:05:57+00:00

PETSc 3.16.6 Requirement for DAMASK 3.0.0 is a PETSc before 3.20. If the system python is newer (e.g.3.13) a specific version has to be installed (deprecated module) python3.12 ./configure --prefix=/opt/apps/libs/petsc-3.16.6 --with-cc=mpicc --with-cxx=mpicxx --with-fc=mpif90

PGPLOT

Anonymous (anonymous@undisclosed.example.com) — 2016-06-01T13:22:44+00:00

PGPLOT Installation Install the PGPLOT with the graphic devices: /PS, /VPS, /CPS, /VCPS and /XServe (/PS is only black and white). In the make file the linker flag could be so: LFLAGS = -L$(PGPLOT_DIR) -lpgplot -lz -L/usr/lib64 -lX11

SALOME

Anonymous (anonymous@undisclosed.example.com) — 2022-09-30T09:19:11+00:00

SALOME Website Salome 9.6.0 module load salome/9.6.0 Salome 9.9.0 module load salome/9.9.0 SALOME is an open-source software that provides a generic platform for Pre- and Post-Processing for numerical simulation. It is based on an open and flexible architecture made of reusable components.

SciPy

Anonymous (anonymous@undisclosed.example.com) — 2014-08-12T14:37:39+00:00

SciPy Website www.scipy.org Tutorials * Python Scientific Lecture Notes python Modified / Piped SciPy . /usr/net/bin/module_pyton SciPy ---------- Version: 0.13.0 Getting Started This command executes a script loading a special python module providing SciPy 0.13.0, NumPy 1.7.1, Matplotlib 1.1.1rc : source /usr/net/bin/module_python

SfePy

Anonymous (anonymous@undisclosed.example.com) — 2017-01-26T10:39:02+00:00

SfePy Website Requirements module load mpi Result appdirs==1.4.0 apptools==4.4.0 configobj==5.0.6 cycler==0.10.0 Cython==0.25.2 ez-setup==0.9 FiPy==3.1.3 functools32==3.2.3.post2 h5py==2.6.0 matplotlib==2.0.0 mpi4py==2.0.0 mpmath==0.19

Tecplot 360

Anonymous (anonymous@undisclosed.example.com) — 2014-08-12T14:37:39+00:00

Tecplot 360 Chorus 360 (chorus3602013r1 ) > /usr/net/tecplot/chorus3602013r1/bin/tec360 Chorus 360 Desktop (chorus360de2013r1) > /usr/net/tecplot/chorus360de2013r1/bin/tec360 ---------- Only available for members of the Software User Group Tecplot

LaTeX

Anonymous (anonymous@undisclosed.example.com) — 2020-10-08T14:20:41+00:00

LaTeX $LaTeX_e$ First steps - courses Documentation Course material Introduction to LaTeX by Ryan Higginbottom. Installation of additional modules Every single user can install additional modules for his own use in his home directory. Initialize the ~/texmf folder for module installation and configuration:

Trilinos

Anonymous (anonymous@undisclosed.example.com) — 2019-02-20T09:20:59+00:00

Trilinos Trilinos (default) module load trilinos/12.10.1-deal85-mpi requirements: module load mpi/openmpi-x86_64 module load parmetis/4.0.3 basic settings -D BUILD_SHARED_LIBS:BOOL=ON -D TPL_ENABLE_MPI:BOOL=ON -D CMAKE_INSTALL_PREFIX:PATH=${INSTALL_DIR} # -> results in LD_LIBRARY_PATH=${INSTALL_DIR}/lib -D Trilinos_ENABLE_PyTrilinos:BOOL=ON -D PyTrilinos_INSTALL_PREFIX:PATH=${INSTALL_DIR} # -> results in PYTHONPATH=${INSTALL_DIR}/lib/${PYTHON_VERSION}/site-pac…

Yade

Anonymous (anonymous@undisclosed.example.com) — 2017-01-23T09:28:22+00:00

Yade Website yade 1.20.0 (Fedora 25) TESTING Features: Odeint VTK OpenMP GTS GUI-Qt5 CGAL PFVFLOW LINSOLV SPH GL2PS LBMFLOW MASK_ARBITRARY /opt/apps/yade/1.20.0 module load yade/1.20.0 yade 1.14.0 (Fedora 23) Features: Odeint VTK OpenMP GTS